Limosilactobacillus fermentum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Limosilactobacillus; s__Limosilactobacillus fermentum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum; x__Lactobacillus fermentum F-6
NCBI Strain Identifiers F-6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000159215.1)
Genome Characteristics
CheckM Completeness 98.63%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 100.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 1
N50 Contigs 2,064,620 bp
Longest Contig 2,064,620 bp
Scaffold Count 1
N50 Scaffolds 2,064,620 bp
Longest Scaffold 2,064,620 bp
Genome Size 2,064,620 bp
Protein Count 2,031
Coding Density 85.25%
GC Percentage 51.67%
Ambiguous Bases N/A
GTDB representative GCA_000159215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM39716v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02603935
Country None
Date 2013-5-16
Genbank Assembly Accession GCA_000397165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 1,998
Refseq Category na
Seq Rel Date 2013/05/16
Spanned Gaps 0
Species Taxid 1613
SSU Count 5
Submitter The Key Laboratory of Dairy Biotechnology and Bioengineering, Education Ministry of P. R. China, Department of Food Science and Engineering, Inner Mongolia Agricultural University, China
Taxid 767453
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None