Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157; x__Escherichia coli O157 str. NCCP15738
NCBI Strain Identifiers NCCP15738
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 12
Contig Count 415
N50 Contigs 66,926 bp
Longest Contig 206,132 bp
Scaffold Count 415
N50 Scaffolds 66,926 bp
Longest Scaffold 206,132 bp
Genome Size 4,959,704 bp
Protein Count 4,859
Coding Density 88.10%
GC Percentage 50.65%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name TG1203D3338
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470150
Country South Korea
Date 2013-05-14
Genbank Assembly Accession GCA_000392575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,200
Refseq Category na
Seq Rel Date 2013/05/14
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter Korea National Institute of Health, Korea Centers for Disease Control & Prevention
Taxid 1317131
Total Gap Length 0
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASHB00000000.1