Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Agona; x__Salmonella enterica subsp. enterica serovar Agona str. 60.O.08
NCBI Strain Identifiers 60.O.08
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 3
tRNA Count 19
Contig Count 242
N50 Contigs 74,499 bp
Longest Contig 186,506 bp
Scaffold Count 152
N50 Scaffolds 144,530 bp
Longest Scaffold 308,218 bp
Genome Size 4,714,157 bp
Protein Count 4,468
Coding Density 87.16%
GC Percentage 52.06%
Ambiguous Bases 18
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 60.O.08
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2271935
Country United Kingdom:Scotland
Date 2013-04-30
Genbank Assembly Accession GCA_000389315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human (feces)
Latitude Longitude None
Molecule Count N/A
CDS Count 4,709
Refseq Category na
Seq Rel Date 2013/04/30
Spanned Gaps 90
Species Taxid 28901
SSU Count 2
Submitter ERI
Taxid 1265664
Total Gap Length 6160
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CARO00000000.1