Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Agona; x__Salmonella enterica subsp. enterica serovar Agona str. 41.E.09
NCBI Strain Identifiers 41.E.09
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.3%
CheckM Contamination 0.62%
CheckM Strain Heterogeneity 30.0
5S Count 3
16S Count 2
23S Count 4
tRNA Count 18
Contig Count 383
N50 Contigs 32,851 bp
Longest Contig 119,112 bp
Scaffold Count 303
N50 Scaffolds 46,132 bp
Longest Scaffold 183,317 bp
Genome Size 4,743,394 bp
Protein Count 4,623
Coding Density 87.16%
GC Percentage 52.05%
Ambiguous Bases 5
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 41.E.09
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2272714
Country Ireland
Date 2013-05-01
Genbank Assembly Accession GCA_000388935.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Environment (waste water)
Latitude Longitude None
Molecule Count N/A
CDS Count 4,847
Refseq Category na
Seq Rel Date 2013/05/01
Spanned Gaps 80
Species Taxid 28901
SSU Count 2
Submitter ERI
Taxid 1265652
Total Gap Length 6594
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CASF00000000.1