Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Agona; x__Salmonella enterica subsp. enterica serovar Agona str. 30.H.04
NCBI Strain Identifiers 30.H.04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 60.0
5S Count 3
16S Count 3
23S Count 4
tRNA Count 19
Contig Count 212
N50 Contigs 111,094 bp
Longest Contig 482,172 bp
Scaffold Count 160
N50 Scaffolds 155,088 bp
Longest Scaffold 516,893 bp
Genome Size 4,872,238 bp
Protein Count 4,642
Coding Density 87.30%
GC Percentage 52.03%
Ambiguous Bases 13
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 30.H.04
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2272549
Country Ireland
Date 2013-04-30
Genbank Assembly Accession GCA_000388735.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human (feces)
Latitude Longitude None
Molecule Count N/A
CDS Count 4,896
Refseq Category na
Seq Rel Date 2013/04/30
Spanned Gaps 52
Species Taxid 28901
SSU Count 3
Submitter ERI
Taxid 1265661
Total Gap Length 4785
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CATW00000000.1