Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Agona; x__Salmonella enterica subsp. enterica serovar Agona str. 27.O.98
NCBI Strain Identifiers 27.O.98
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 4
tRNA Count 19
Contig Count 210
N50 Contigs 108,074 bp
Longest Contig 206,775 bp
Scaffold Count 183
N50 Scaffolds 119,689 bp
Longest Scaffold 225,828 bp
Genome Size 4,738,572 bp
Protein Count 4,523
Coding Density 87.51%
GC Percentage 52.04%
Ambiguous Bases 12
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 27.O.98
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2272674
Country USA
Date 2013-05-01
Genbank Assembly Accession GCA_000388675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human
Latitude Longitude None
Molecule Count N/A
CDS Count 4,755
Refseq Category na
Seq Rel Date 2013/05/01
Spanned Gaps 27
Species Taxid 28901
SSU Count 2
Submitter ERI
Taxid 1265645
Total Gap Length 2145
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CASQ00000000.1