Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Agona; x__Salmonella enterica subsp. enterica serovar Agona str. 04.O.05
NCBI Strain Identifiers 04.O.05
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.98%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 198
N50 Contigs 111,941 bp
Longest Contig 230,382 bp
Scaffold Count 178
N50 Scaffolds 122,477 bp
Longest Scaffold 319,268 bp
Genome Size 4,787,160 bp
Protein Count 4,582
Coding Density 87.54%
GC Percentage 52.06%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 04.O.05
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2272255
Country Ireland
Date 2013-04-30
Genbank Assembly Accession GCA_000388255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human (feces)
Latitude Longitude None
Molecule Count N/A
CDS Count 4,804
Refseq Category na
Seq Rel Date 2013/04/30
Spanned Gaps 20
Species Taxid 28901
SSU Count 1
Submitter ERI
Taxid 1265657
Total Gap Length 1943
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CATN00000000.1