Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HM69
NCBI Strain Identifiers HM69
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 1.3%
CheckM Strain Heterogeneity 78.57
5S Count 5
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 124
N50 Contigs 105,356 bp
Longest Contig 304,480 bp
Scaffold Count 124
N50 Scaffolds 105,356 bp
Longest Scaffold 304,480 bp
Genome Size 5,367,837 bp
Protein Count 5,104
Coding Density 87.93%
GC Percentage 50.70%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM38786v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436020
Country USA: MI
Date 2013-5-2
Genbank Assembly Accession GCA_000387865.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,564
Refseq Category na
Seq Rel Date 2013/05/02
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter Institute for Genome Sciences
Taxid 1308984
Total Gap Length 0
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APNV00000000.1