Amphritea japonica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Nitrincolaceae; g__Amphritea; s__Amphritea japonica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Oceanospirillales; f__Oceanospirillaceae; g__Amphritea; s__Amphritea japonica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Oceanospirillales; f__Oceanospirillaceae; g__Amphritea; s__Amphritea japonica; x__Amphritea japonica ATCC BAA-1530
NCBI Strain Identifiers JAMM 1866
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.14%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 28
N50 Contigs 457,905 bp
Longest Contig 893,255 bp
Scaffold Count 22
N50 Scaffolds 572,840 bp
Longest Scaffold 893,255 bp
Genome Size 3,799,525 bp
Protein Count 3,489
Coding Density 88.68%
GC Percentage 47.48%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM38178v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440491
Country None
Date 2013-4-24
Genbank Assembly Accession GCA_000381785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,456
Refseq Category representative genome
Seq Rel Date 2013/04/24
Spanned Gaps 6
Species Taxid 452627
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 1278309
Total Gap Length 3149
Translation Table 11
tRNA Count (total) 51
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARMN00000000.1