Rhodonellum psychrophilum
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae; g__Rhodonellum; s__Rhodonellum psychrophilum
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cytophagaceae; g__Rhodonellum; s__Rhodonellum psychrophilum
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cytophagaceae; g__Rhodonellum; s__Rhodonellum psychrophilum; x__Rhodonellum psychrophilum GCM71 = DSM 17998
NCBI Strain Identifiers DSM 17998
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 18
Contig Count 62
N50 Contigs 194,487 bp
Longest Contig 627,008 bp
Scaffold Count 51
N50 Scaffolds 212,581 bp
Longest Scaffold 627,008 bp
Genome Size 5,193,701 bp
Protein Count 4,430
Coding Density 86.72%
GC Percentage 41.83%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM38154v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441658
Country None
Date 2013-4-24
Genbank Assembly Accession GCA_000381545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 61.18350 N 48.01654 W
Molecule Count N/A
CDS Count 4,375
Refseq Category representative genome
Seq Rel Date 2013/04/24
Spanned Gaps 11
Species Taxid 336828
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1123057
Total Gap Length 8199
Translation Table 11
tRNA Count (total) 37
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARMB00000000.1