Pseudomonas_E sp001655615
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp001655615
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas mandelii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas mandelii; x__Pseudomonas mandelii 36MFCvi1.1
NCBI Strain Identifiers 36MFCvi1.1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001655615.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 35
N50 Contigs 441,598 bp
Longest Contig 1,073,718 bp
Scaffold Count 29
N50 Scaffolds 781,050 bp
Longest Scaffold 1,435,845 bp
Genome Size 6,553,994 bp
Protein Count 5,905
Coding Density 88.40%
GC Percentage 59.18%
Ambiguous Bases N/A
GTDB representative GCA_001655615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM38128v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440483
Country None
Date 2013-4-24
Genbank Assembly Accession GCA_000381285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,978
Refseq Category na
Seq Rel Date 2013/04/24
Spanned Gaps 6
Species Taxid 75612
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1151127
Total Gap Length 2375
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ARLP00000000.1