Thioalkalivibrio halophilus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Ectothiorhodospirales; f__Thioalkalivibrionaceae; g__Thioalkalivibrio; s__Thioalkalivibrio halophilus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales; f__Ectothiorhodospiraceae; g__Thioalkalivibrio; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales; f__Ectothiorhodospiraceae; g__Thioalkalivibrio; s__Thioalkalivibrio sp. ALE11
NCBI Strain Identifiers ALE11
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001995255.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 59
N50 Contigs 182,926 bp
Longest Contig 420,253 bp
Scaffold Count 55
N50 Scaffolds 215,431 bp
Longest Scaffold 420,253 bp
Genome Size 2,985,038 bp
Protein Count 2,803
Coding Density 91.49%
GC Percentage 67.36%
Ambiguous Bases N/A
GTDB representative GCA_001995255.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM38120v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440987
Country None
Date 2013-4-24
Genbank Assembly Accession GCA_000381205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,789
Refseq Category na
Seq Rel Date 2013/04/24
Spanned Gaps 4
Species Taxid 1265494
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1265494
Total Gap Length 2245
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ARLL00000000.1