ESFC-1 sp000380225
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Spirulinaceae; g__ESFC-1; s__ESFC-1 sp000380225
Filtered NCBI Taxonomy d__Bacteria; p__Cyanobacteria; c__; o__Oscillatoriales; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; x__Cyanobacteria/Melainabacteria group; p__Cyanobacteria; x__Oscillatoriophycideae; o__Oscillatoriales; x__unclassified Oscillatoriales; x__unclassified Oscillatoriales (miscellaneous); s__filamentous cyanobacterium ESFC-1
NCBI Strain Identifiers ESFC-1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.04%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 50.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 53
N50 Contigs 152,564 bp
Longest Contig 386,593 bp
Scaffold Count 3
N50 Scaffolds 5,431,811 bp
Longest Scaffold 5,431,811 bp
Genome Size 5,632,035 bp
Protein Count 4,868
Coding Density 83.32%
GC Percentage 46.51%
Ambiguous Bases 44
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM38022v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02256433
Country None
Date 2013-4-23
Genbank Assembly Accession GCA_000380225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source shipworm (Teredinidae) gill
Latitude Longitude None
Molecule Count N/A
CDS Count 4,941
Refseq Category representative genome
Seq Rel Date 2013/04/23
Spanned Gaps 50
Species Taxid 1128427
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1128427
Total Gap Length 4910
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ARCP00000000.1