Streptococcus caballi
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus caballi
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus caballi
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus caballi; x__Streptococcus caballi DSM 19004
NCBI Strain Identifiers DSM 19004
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.5%
CheckM Contamination 0.75%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 63
N50 Contigs 73,047 bp
Longest Contig 149,735 bp
Scaffold Count 62
N50 Scaffolds 73,047 bp
Longest Scaffold 235,067 bp
Genome Size 2,122,044 bp
Protein Count 2,121
Coding Density 85.80%
GC Percentage 40.37%
Ambiguous Bases 77
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37998v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02256438
Country Australia
Date 2013-4-23
Genbank Assembly Accession GCA_000379985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Rectum of horse with oligofructose-induced equine laminitis
Latitude Longitude None
Molecule Count N/A
CDS Count 2,128
Refseq Category representative genome
Seq Rel Date 2013/04/23
Spanned Gaps 1
Species Taxid 439220
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 1123298
Total Gap Length 2129
Translation Table 11
tRNA Count (total) 32
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARCA00000000.1