Rodentibacter pneumotropicus
Isolate HQ 5S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Rodentibacter; s__Rodentibacter pneumotropicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Rodentibacter; s__Rodentibacter pneumotropicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Rodentibacter; s__Rodentibacter pneumotropicus; x__Rodentibacter pneumotropicus DSM 21403
NCBI Strain Identifiers DSM 21403
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (16 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 0
23S Count 1
tRNA Count 18
Contig Count 24
N50 Contigs 157,442 bp
Longest Contig 281,812 bp
Scaffold Count 22
N50 Scaffolds 179,185 bp
Longest Scaffold 281,812 bp
Genome Size 2,257,166 bp
Protein Count 2,082
Coding Density 89.93%
GC Percentage 39.77%
Ambiguous Bases 64
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37990v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02256441
Country USA
Date 2013-4-23
Genbank Assembly Accession GCA_000379905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Mouse lung
Latitude Longitude None
Molecule Count N/A
CDS Count 2,091
Refseq Category representative genome
Seq Rel Date 2013/04/23
Spanned Gaps 2
Species Taxid 758
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1122936
Total Gap Length 717
Translation Table 11
tRNA Count (total) 48
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARBW00000000.1