Flexithrix dorotheae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Flammeovirgaceae; g__Flexithrix; s__Flexithrix dorotheae
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Flammeovirgaceae; g__Flexithrix; s__Flexithrix dorotheae
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Flammeovirgaceae; g__Flexithrix; s__Flexithrix dorotheae; x__Flexithrix dorotheae DSM 6795
NCBI Strain Identifiers DSM 6795
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.4%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 105
N50 Contigs 337,135 bp
Longest Contig 878,952 bp
Scaffold Count 101
N50 Scaffolds 337,135 bp
Longest Scaffold 878,952 bp
Genome Size 9,536,821 bp
Protein Count 7,391
Coding Density 86.98%
GC Percentage 36.34%
Ambiguous Bases 204
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37976v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02256418
Country India
Date 2013-4-23
Genbank Assembly Accession GCA_000379765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Beach silt
Latitude Longitude 10.02 N 76.30 E
Molecule Count N/A
CDS Count 7,295
Refseq Category representative genome
Seq Rel Date 2013/04/23
Spanned Gaps 4
Species Taxid 70993
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1121904
Total Gap Length 1143
Translation Table 11
tRNA Count (total) 44
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARBP00000000.1