Enterococcus_E cecorum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_E; s__Enterococcus_E cecorum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__Enterococcus cecorum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__Enterococcus cecorum; x__Enterococcus cecorum DSM 20682 = ATCC 43198
NCBI Strain Identifiers DSM 20682
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000407565.1)
Genome Characteristics
CheckM Completeness 99.17%
CheckM Contamination 0.66%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 50
N50 Contigs 81,363 bp
Longest Contig 253,904 bp
Scaffold Count 47
N50 Scaffolds 109,686 bp
Longest Scaffold 282,143 bp
Genome Size 2,340,853 bp
Protein Count 2,363
Coding Density 87.52%
GC Percentage 36.36%
Ambiguous Bases 70
GTDB representative GCA_000407565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37974v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02256445
Country Belgium
Date 2013-4-23
Genbank Assembly Accession GCA_000379745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Chicken; ceca; Gent; Belgium
Latitude Longitude 51.053 N 3.730 E
Molecule Count N/A
CDS Count 2,359
Refseq Category na
Seq Rel Date 2013/04/23
Spanned Gaps 3
Species Taxid 44008
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 1121864
Total Gap Length 4043
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARBO00000000.1