Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Verrucomicrobiota; c__Verrucomicrobiae; o__Methylacidiphilales; f__Methylacidiphilaceae; g__LP2A; s__LP2A sp000379365
Filtered NCBI Taxonomy d__Bacteria; p__Verrucomicrobia; c__Verrucomicrobiae; o__Verrucomicrobiales; f__Verrucomicrobiaceae; g__Verrucomicrobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__PVC group; p__Verrucomicrobia; c__Verrucomicrobiae; o__Verrucomicrobiales; f__Verrucomicrobiaceae; g__Verrucomicrobium; s__Verrucomicrobium sp. 3C
NCBI Strain Identifiers 3C
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 97.93%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 139
N50 Contigs 67,862 bp
Longest Contig 174,256 bp
Scaffold Count 8
N50 Scaffolds 2,050,659 bp
Longest Scaffold 2,050,659 bp
Genome Size 2,772,066 bp
Protein Count 2,746
Coding Density 86.45%
GC Percentage 60.89%
Ambiguous Bases 81
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37936v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02256457
Country None
Date 2013-4-23
Genbank Assembly Accession GCA_000379365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude None
Molecule Count N/A
CDS Count 2,767
Refseq Category na
Seq Rel Date 2013/04/23
Spanned Gaps 131
Species Taxid 1134055
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1134055
Total Gap Length 13010
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ARAS00000000.1