Bradyrhizobium elkanii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Bradyrhizobium; s__Bradyrhizobium elkanii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium elkanii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium elkanii; x__Bradyrhizobium elkanii USDA 76
NCBI Strain Identifiers USDA 76
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (9 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 25
N50 Contigs 1,804,836 bp
Longest Contig 2,493,299 bp
Scaffold Count 2
N50 Scaffolds 9,116,505 bp
Longest Scaffold 9,116,505 bp
Genome Size 9,484,767 bp
Protein Count 8,961
Coding Density 83.80%
GC Percentage 63.72%
Ambiguous Bases 287
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37914v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02261261
Country USA
Date 2013-4-23
Genbank Assembly Accession GCA_000379145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Virginia
Latitude Longitude 38.87997 N 77.10677 W
Molecule Count N/A
CDS Count 8,915
Refseq Category representative genome
Seq Rel Date 2013/04/23
Spanned Gaps 23
Species Taxid 29448
SSU Count 1
Submitter JGI
Taxid 398525
Total Gap Length 2300
Translation Table 11
tRNA Count (total) 50
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARAG00000000.1