Micromonospora pacifica_C
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Micromonosporaceae; g__Micromonospora; s__Micromonospora pacifica_C
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica; x__Salinispora pacifica DSM 45549 = CNT-150
NCBI Strain Identifiers DSM 45549
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.06%
CheckM Contamination 0.65%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 37
N50 Contigs 512,538 bp
Longest Contig 807,760 bp
Scaffold Count 3
N50 Scaffolds 5,092,107 bp
Longest Scaffold 5,092,107 bp
Genome Size 5,198,196 bp
Protein Count 4,904
Coding Density 86.99%
GC Percentage 69.38%
Ambiguous Bases 42
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37906v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02261320
Country None
Date 2013-04-23
Genbank Assembly Accession GCA_000379065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude None
Molecule Count N/A
CDS Count 4,982
Refseq Category na
Seq Rel Date 2013/04/23
Spanned Gaps 34
Species Taxid 351187
SSU Count 2
Submitter JGI
Taxid 999545
Total Gap Length 3400
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AQZW00000000.1