Flavobacterium rivuli
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium rivuli
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium rivuli
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium rivuli; x__Flavobacterium rivuli WB 3.3-2 = DSM 21788
NCBI Strain Identifiers DSM 21788
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 26
N50 Contigs 439,581 bp
Longest Contig 712,694 bp
Scaffold Count 23
N50 Scaffolds 439,581 bp
Longest Scaffold 712,694 bp
Genome Size 4,489,248 bp
Protein Count 3,995
Coding Density 88.51%
GC Percentage 39.62%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37848v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441333
Country Germany
Date 2013-4-23
Genbank Assembly Accession GCA_000378485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,955
Refseq Category representative genome
Seq Rel Date 2013/04/23
Spanned Gaps 3
Species Taxid 498301
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1121895
Total Gap Length 1880
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARKJ00000000.1