Sediminispirochaeta bajacaliforniensis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Spirochaetales; f__Sediminispirochaetaceae; g__Sediminispirochaeta; s__Sediminispirochaeta bajacaliforniensis
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Sediminispirochaeta; s__Sediminispirochaeta bajacaliforniensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Sediminispirochaeta; s__Sediminispirochaeta bajacaliforniensis; x__Sediminispirochaeta bajacaliforniensis DSM 16054
NCBI Strain Identifiers DSM 16054
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 97.7%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 19
Contig Count 80
N50 Contigs 166,221 bp
Longest Contig 375,186 bp
Scaffold Count 75
N50 Scaffolds 176,769 bp
Longest Scaffold 375,186 bp
Genome Size 4,576,607 bp
Protein Count 4,276
Coding Density 93.49%
GC Percentage 49.17%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37820v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441006
Country Mexico
Date 2013-4-23
Genbank Assembly Accession GCA_000378205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,242
Refseq Category na
Seq Rel Date 2013/04/23
Spanned Gaps 5
Species Taxid 148
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1123274
Total Gap Length 1758
Translation Table 11
tRNA Count (total) 44
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARJU00000000.1