Micromonospora pacifica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Micromonosporaceae; g__Micromonospora; s__Micromonospora pacifica
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica; x__Salinispora pacifica CNT851
NCBI Strain Identifiers CNT851
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000514775.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.42%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 106
N50 Contigs 120,265 bp
Longest Contig 470,366 bp
Scaffold Count 100
N50 Scaffolds 136,999 bp
Longest Scaffold 580,290 bp
Genome Size 5,263,032 bp
Protein Count 4,897
Coding Density 87.42%
GC Percentage 69.95%
Ambiguous Bases N/A
GTDB representative GCA_000514775.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37528v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441010
Country None
Date 2013-4-23
Genbank Assembly Accession GCA_000375285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,896
Refseq Category na
Seq Rel Date 2013/04/23
Spanned Gaps 6
Species Taxid 351187
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1169180
Total Gap Length 3168
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ARHL00000000.1