Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae; g__Echinicola; s__Echinicola pacifica
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cyclobacteriaceae; g__Echinicola; s__Echinicola pacifica
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cyclobacteriaceae; g__Echinicola; s__Echinicola pacifica; x__Echinicola pacifica DSM 19836
NCBI Strain Identifiers DSM 19836
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 0
tRNA Count 19
Contig Count 30
N50 Contigs 832,219 bp
Longest Contig 1,065,264 bp
Scaffold Count 23
N50 Scaffolds 832,219 bp
Longest Scaffold 1,065,264 bp
Genome Size 5,442,202 bp
Protein Count 4,163
Coding Density 86.59%
GC Percentage 43.81%
Ambiguous Bases 120
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM37324v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441711
Country Russia
Date 2013-4-23
Genbank Assembly Accession GCA_000373245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,075
Refseq Category representative genome
Seq Rel Date 2013/04/23
Spanned Gaps 7
Species Taxid 346377
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1121859
Total Gap Length 7882
Translation Table 11
tRNA Count (total) 39
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ARDN00000000.1