Aggregatibacter actinomycetemcomitans
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans; x__Aggregatibacter actinomycetemcomitans DSM 8324
NCBI Strain Identifiers DSM 8324
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (39 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.77%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 33
N50 Contigs 121,028 bp
Longest Contig 216,112 bp
Scaffold Count 33
N50 Scaffolds 121,028 bp
Longest Scaffold 216,112 bp
Genome Size 2,085,887 bp
Protein Count 2,041
Coding Density 87.68%
GC Percentage 44.42%
Ambiguous Bases 12
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM37236v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02256508
Country Denmark
Date 2013-04-19
Genbank Assembly Accession GCA_000372365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source abscess
Latitude Longitude None
Molecule Count N/A
CDS Count 2,084
Refseq Category na
Seq Rel Date 2013/04/19
Spanned Gaps 0
Species Taxid 714
SSU Count 5
Submitter DOE Joint Genome Institute
Taxid 1120957
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AQUU00000000.1