Actinopolyspora halophila
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Pseudonocardiaceae; g__Actinopolyspora; s__Actinopolyspora halophila
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinopolysporales; f__Actinopolysporaceae; g__Actinopolyspora; s__Actinopolyspora halophila
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Actinopolysporales; f__Actinopolysporaceae; g__Actinopolyspora; s__Actinopolyspora halophila; x__Actinopolyspora halophila DSM 43834
NCBI Strain Identifiers DSM 43834
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.53%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 2
N50 Contigs 5,258,501 bp
Longest Contig 5,258,501 bp
Scaffold Count 2
N50 Scaffolds 5,258,501 bp
Longest Scaffold 5,258,501 bp
Genome Size 5,353,291 bp
Protein Count 4,891
Coding Density 84.50%
GC Percentage 68.02%
Ambiguous Bases 8
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM37178v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02261305
Country None
Date 2013-04-19
Genbank Assembly Accession GCA_000371785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source contaminant of a culture medium containing 25% NaCl
Latitude Longitude None
Molecule Count N/A
CDS Count 4,799
Refseq Category representative genome
Seq Rel Date 2013/04/19
Spanned Gaps 0
Species Taxid 1850
SSU Count 6
Submitter JGI
Taxid 1089546
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AQUI00000000.1