Mycobacterium abscessus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium abscessus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacteroides; s__Mycobacteroides abscessus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacteroides; s__Mycobacteroides abscessus; sb__Mycobacteroides abscessus subsp. bolletii; x__Mycobacteroides abscessus subsp. bolletii INCQS 00594
NCBI Strain Identifiers INCQS 00594
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000069185.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.5%
CheckM Strain Heterogeneity 88.89
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 84
N50 Contigs 664,213 bp
Longest Contig 1,189,491 bp
Scaffold Count 84
N50 Scaffolds 664,213 bp
Longest Scaffold 1,189,491 bp
Genome Size 4,941,231 bp
Protein Count 4,936
Coding Density 92.36%
GC Percentage 64.25%
Ambiguous Bases 8
GTDB representative GCA_000069185.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name MaINCQS00594_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471375
Country Brazil
Date 2013-09-18
Genbank Assembly Accession GCA_000363915.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source surgical-site abscess material
Latitude Longitude None
Molecule Count 1
CDS Count 4,975
Refseq Category na
Seq Rel Date 2013/09/18
Spanned Gaps 0
Species Taxid 36809
SSU Count 1
Submitter Rede Paraense de Genômica e Proteômica
Taxid 1087469
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AUVF00000000.1