Tropheryma whipplei
Isolate MQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Microbacteriaceae; g__Tropheryma; s__Tropheryma whipplei
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__; g__Tropheryma; s__Tropheryma whipplei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; x__unclassified Micrococcales; g__Tropheryma; s__Tropheryma whipplei; x__Tropheryma whipplei str. Bcu26
NCBI Strain Identifiers Bcu26
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000007485.1)
Genome Characteristics
CheckM Completeness 75.68%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 138
N50 Contigs 85,916 bp
Longest Contig 135,038 bp
Scaffold Count 138
N50 Scaffolds 85,916 bp
Longest Scaffold 135,038 bp
Genome Size 880,271 bp
Protein Count 925
Coding Density 88.19%
GC Percentage 46.38%
Ambiguous Bases 162
GTDB representative GCA_000007485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35940v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2272123
Country None
Date 2013-04-03
Genbank Assembly Accession GCA_000359405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 833
Refseq Category na
Seq Rel Date 2013/04/03
Spanned Gaps 0
Species Taxid 2039
SSU Count 1
Submitter ebi
Taxid 1294039
Total Gap Length 0
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CAVB000000000.1