Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli P0304816.10
NCBI Strain Identifiers P0304816.10
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.29%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 66.67
5S Count 6
16S Count 7
23S Count 1
tRNA Count 19
Contig Count 178
N50 Contigs 156,921 bp
Longest Contig 449,418 bp
Scaffold Count 178
N50 Scaffolds 156,921 bp
Longest Scaffold 449,418 bp
Genome Size 5,235,757 bp
Protein Count 5,143
Coding Density 87.54%
GC Percentage 50.51%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35843v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00829504
Country Bangladesh
Date 2013-4-8
Genbank Assembly Accession GCA_000358435.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,505
Refseq Category na
Seq Rel Date 2013/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 9
Submitter IGS
Taxid 1116186
Total Gap Length 0
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AQAT00000000.1