Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli P0304777.9
NCBI Strain Identifiers P0304777.9
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 25.0
5S Count 7
16S Count 2
23S Count 2
tRNA Count 19
Contig Count 199
N50 Contigs 97,732 bp
Longest Contig 298,170 bp
Scaffold Count 199
N50 Scaffolds 97,732 bp
Longest Scaffold 298,170 bp
Genome Size 5,083,673 bp
Protein Count 4,961
Coding Density 87.81%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35841v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00829502
Country Bangladesh
Date 2013-4-8
Genbank Assembly Accession GCA_000358415.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,379
Refseq Category na
Seq Rel Date 2013/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 8
Submitter IGS
Taxid 1116170
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AQAS00000000.1