Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli P0305260.8
NCBI Strain Identifiers P0305260.8
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.15%
CheckM Strain Heterogeneity 57.14
5S Count 8
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 126
N50 Contigs 113,573 bp
Longest Contig 271,841 bp
Scaffold Count 126
N50 Scaffolds 113,573 bp
Longest Scaffold 271,841 bp
Genome Size 4,820,619 bp
Protein Count 4,650
Coding Density 87.89%
GC Percentage 50.81%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35812v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00829532
Country Bangladesh
Date 2013-04-08
Genbank Assembly Accession GCA_000358125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,063
Refseq Category na
Seq Rel Date 2013/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter IGS
Taxid 1116082
Total Gap Length 0
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AQBR00000000.1