Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli P0305260.5
NCBI Strain Identifiers P0305260.5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.56%
CheckM Strain Heterogeneity 25.0
5S Count 5
16S Count 4
23S Count 0
tRNA Count 19
Contig Count 176
N50 Contigs 120,521 bp
Longest Contig 271,962 bp
Scaffold Count 176
N50 Scaffolds 120,521 bp
Longest Scaffold 271,962 bp
Genome Size 4,848,239 bp
Protein Count 4,684
Coding Density 87.81%
GC Percentage 50.82%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35806v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00829528
Country Bangladesh
Date 2013-4-8
Genbank Assembly Accession GCA_000358065.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,106
Refseq Category na
Seq Rel Date 2013/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 5
Submitter IGS
Taxid 1116194
Total Gap Length 0
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AQBO00000000.1