Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli BCE008_MS-01
NCBI Strain Identifiers BCE008_MS-01
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 2
tRNA Count 20
Contig Count 573
N50 Contigs 26,332 bp
Longest Contig 99,402 bp
Scaffold Count 573
N50 Scaffolds 26,332 bp
Longest Scaffold 99,402 bp
Genome Size 4,904,573 bp
Protein Count 5,007
Coding Density 87.71%
GC Percentage 50.99%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35626v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00829289
Country Bangladesh
Date 2013-4-8
Genbank Assembly Accession GCA_000356265.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,375
Refseq Category na
Seq Rel Date 2013/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter IGS
Taxid 1116110
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APXL00000000.1