Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 2730450
NCBI Strain Identifiers 2730450
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 98.97%
CheckM Contamination 0.54%
CheckM Strain Heterogeneity 25.0
5S Count 6
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 221
N50 Contigs 61,653 bp
Longest Contig 221,013 bp
Scaffold Count 221
N50 Scaffolds 61,653 bp
Longest Scaffold 221,013 bp
Genome Size 5,021,465 bp
Protein Count 5,016
Coding Density 87.15%
GC Percentage 50.45%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35620v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00829260
Country Bangladesh
Date 2013-4-8
Genbank Assembly Accession GCA_000356205.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,502
Refseq Category na
Seq Rel Date 2013/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter IGS
Taxid 1116006
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APXE00000000.1