Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 2729250
NCBI Strain Identifiers 2729250
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.53%
CheckM Strain Heterogeneity 50.0
5S Count 7
16S Count 7
23S Count 1
tRNA Count 19
Contig Count 147
N50 Contigs 155,085 bp
Longest Contig 294,263 bp
Scaffold Count 147
N50 Scaffolds 155,085 bp
Longest Scaffold 294,263 bp
Genome Size 5,082,168 bp
Protein Count 4,983
Coding Density 87.79%
GC Percentage 50.47%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35606v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00829239
Country Bangladesh
Date 2013-4-8
Genbank Assembly Accession GCA_000356065.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,385
Refseq Category na
Seq Rel Date 2013/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter IGS
Taxid 1116004
Total Gap Length 0
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AQEC00000000.1