Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 2872800
NCBI Strain Identifiers 2872800
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.62%
CheckM Strain Heterogeneity 40.0
5S Count 7
16S Count 8
23S Count 1
tRNA Count 19
Contig Count 111
N50 Contigs 185,393 bp
Longest Contig 415,545 bp
Scaffold Count 111
N50 Scaffolds 185,393 bp
Longest Scaffold 415,545 bp
Genome Size 5,054,520 bp
Protein Count 4,934
Coding Density 87.78%
GC Percentage 50.59%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35445v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00829280
Country Bangladesh
Date 2013-04-06
Genbank Assembly Accession GCA_000354455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,318
Refseq Category na
Seq Rel Date 2013/04/06
Spanned Gaps 0
Species Taxid 562
SSU Count 8
Submitter IGS
Taxid 1116034
Total Gap Length 0
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AQDC00000000.1