Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli MP021017.11
NCBI Strain Identifiers MP021017.11
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.4%
CheckM Strain Heterogeneity 16.67
5S Count 6
16S Count 1
23S Count 0
tRNA Count 18
Contig Count 155
N50 Contigs 105,790 bp
Longest Contig 251,581 bp
Scaffold Count 155
N50 Scaffolds 105,790 bp
Longest Scaffold 251,581 bp
Genome Size 4,924,469 bp
Protein Count 4,850
Coding Density 87.68%
GC Percentage 50.52%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM35441v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00829303
Country Bangladesh
Date 2013-4-6
Genbank Assembly Accession GCA_000354415.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,245
Refseq Category na
Seq Rel Date 2013/04/06
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter IGS
Taxid 1116065
Total Gap Length 0
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AQCV00000000.1