Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Dublin; x__Salmonella enterica subsp. enterica serovar Dublin str. UC16
NCBI Strain Identifiers UC16
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 3
tRNA Count 13
Contig Count 173
N50 Contigs 64,360 bp
Longest Contig 165,803 bp
Scaffold Count 133
N50 Scaffolds 74,021 bp
Longest Scaffold 185,180 bp
Genome Size 4,852,028 bp
Protein Count 4,694
Coding Density 87.67%
GC Percentage 52.09%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM35330v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02415292
Country None
Date 2013-4-9
Genbank Assembly Accession GCA_000353305.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 4,960
Refseq Category na
Seq Rel Date 2013/04/09
Spanned Gaps 40
Species Taxid 28901
SSU Count 1
Submitter The Genome Institute
Taxid 1192688
Total Gap Length 800
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APMR00000000.1