Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE104
NCBI Strain Identifiers KTE104
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 111
N50 Contigs 130,478 bp
Longest Contig 344,122 bp
Scaffold Count 110
N50 Scaffolds 130,478 bp
Longest Scaffold 344,122 bp
Genome Size 4,973,519 bp
Protein Count 4,657
Coding Density 88.20%
GC Percentage 50.54%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE104_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00847690
Country None
Date 2013-04-05
Genbank Assembly Accession GCA_000353185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,068
Refseq Category na
Seq Rel Date 2013/04/05
Spanned Gaps 1
Species Taxid 562
SSU Count 1
Submitter Broad Institute
Taxid 1169372
Total Gap Length 10
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANXL00000000.1