Escherichia coli_D
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE79
NCBI Strain Identifiers KTE79
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 40.0
5S Count 7
16S Count 2
23S Count 6
tRNA Count 19
Contig Count 26
N50 Contigs 366,161 bp
Longest Contig 805,164 bp
Scaffold Count 2
N50 Scaffolds 4,915,429 bp
Longest Scaffold 4,915,429 bp
Genome Size 4,916,581 bp
Protein Count 4,430
Coding Density 87.21%
GC Percentage 50.61%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE79_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00854638
Country Denmark
Date 2013-4-5
Genbank Assembly Accession GCA_000352445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,786
Refseq Category na
Seq Rel Date 2013/04/05
Spanned Gaps 24
Species Taxid 562
SSU Count 2
Submitter Broad Institute
Taxid 1182686
Total Gap Length 56055
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANWA00000000.1