Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE169
NCBI Strain Identifiers KTE169
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.12%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 5
23S Count 9
tRNA Count 20
Contig Count 44
N50 Contigs 272,545 bp
Longest Contig 512,935 bp
Scaffold Count 13
N50 Scaffolds 512,935 bp
Longest Scaffold 1,587,887 bp
Genome Size 5,256,222 bp
Protein Count 4,839
Coding Density 86.99%
GC Percentage 50.56%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE169_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00854688
Country Denmark
Date 2013-04-05
Genbank Assembly Accession GCA_000352025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,048
Refseq Category na
Seq Rel Date 2013/04/05
Spanned Gaps 31
Species Taxid 562
SSU Count 4
Submitter Broad Institute
Taxid 1182736
Total Gap Length 50938
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANVF00000000.1