Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE216
NCBI Strain Identifiers KTE216
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 16.67
5S Count 7
16S Count 8
23S Count 8
tRNA Count 20
Contig Count 48
N50 Contigs 259,392 bp
Longest Contig 673,835 bp
Scaffold Count 16
N50 Scaffolds 559,885 bp
Longest Scaffold 1,581,565 bp
Genome Size 5,309,892 bp
Protein Count 4,994
Coding Density 86.94%
GC Percentage 50.75%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE216_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00974071
Country None
Date 2013-04-05
Genbank Assembly Accession GCA_000351225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,475
Refseq Category na
Seq Rel Date 2013/04/05
Spanned Gaps 32
Species Taxid 562
SSU Count 7
Submitter Broad Institute
Taxid 1181762
Total Gap Length 27684
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANTR00000000.1