Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. PCS-023
NCBI Strain Identifiers PCS-023
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 114
N50 Contigs 130,800 bp
Longest Contig 393,014 bp
Scaffold Count 86
N50 Scaffolds 299,384 bp
Longest Scaffold 573,852 bp
Genome Size 4,031,594 bp
Protein Count 3,578
Coding Density 87.45%
GC Percentage 47.49%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34850v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00989306
Country Bangladesh
Date 2013-03-25
Genbank Assembly Accession GCA_000348505.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,779
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 28
Species Taxid 666
SSU Count 5
Submitter Institute for Genome Sciences
Taxid 1095639
Total Gap Length 1167
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APGG00000000.1