Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. Nep-21113
NCBI Strain Identifiers Nep-21113
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 123
N50 Contigs 168,071 bp
Longest Contig 392,284 bp
Scaffold Count 100
N50 Scaffolds 235,740 bp
Longest Scaffold 536,608 bp
Genome Size 4,042,420 bp
Protein Count 3,592
Coding Density 87.47%
GC Percentage 47.48%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34848v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00989309
Country Nepal
Date 2013-03-25
Genbank Assembly Accession GCA_000348485.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,798
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 23
Species Taxid 666
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1095643
Total Gap Length 733
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APGF00000000.1