Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. NHCC-010F
NCBI Strain Identifiers NHCC-010F
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 117
N50 Contigs 198,593 bp
Longest Contig 382,025 bp
Scaffold Count 92
N50 Scaffolds 227,849 bp
Longest Scaffold 573,745 bp
Genome Size 4,028,811 bp
Protein Count 3,573
Coding Density 87.51%
GC Percentage 47.49%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34844v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00989312
Country Bangladesh
Date 2013-03-25
Genbank Assembly Accession GCA_000348445.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,782
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 25
Species Taxid 666
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 1095658
Total Gap Length 997
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APGD00000000.1