Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. NHCC-008D
NCBI Strain Identifiers NHCC-008D
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 116
N50 Contigs 186,024 bp
Longest Contig 378,701 bp
Scaffold Count 81
N50 Scaffolds 267,934 bp
Longest Scaffold 654,140 bp
Genome Size 3,971,576 bp
Protein Count 3,538
Coding Density 87.27%
GC Percentage 47.56%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34842v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00989276
Country Bangladesh
Date 2013-3-25
Genbank Assembly Accession GCA_000348425.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,743
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 35
Species Taxid 666
SSU Count 1
Submitter Institute for Genome Sciences
Taxid 1095657
Total Gap Length 1969
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APGC00000000.1