Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. NHCC-004A
NCBI Strain Identifiers NHCC-004A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 108
N50 Contigs 150,982 bp
Longest Contig 502,058 bp
Scaffold Count 86
N50 Scaffolds 218,209 bp
Longest Scaffold 536,708 bp
Genome Size 4,031,643 bp
Protein Count 3,575
Coding Density 87.47%
GC Percentage 47.49%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34838v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00989277
Country Bangladesh
Date 2013-03-25
Genbank Assembly Accession GCA_000348385.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,780
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 22
Species Taxid 666
SSU Count 4
Submitter Institute for Genome Sciences
Taxid 1095655
Total Gap Length 864
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APGA00000000.1