Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. EC-0051
NCBI Strain Identifiers EC-0051
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 126
N50 Contigs 168,086 bp
Longest Contig 392,864 bp
Scaffold Count 99
N50 Scaffolds 246,316 bp
Longest Scaffold 737,706 bp
Genome Size 4,069,374 bp
Protein Count 3,665
Coding Density 87.18%
GC Percentage 47.38%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34822v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00989301
Country Bangladesh
Date 2013-3-25
Genbank Assembly Accession GCA_000348225.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water sample
Latitude Longitude None
Molecule Count N/A
CDS Count 3,883
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 27
Species Taxid 666
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 1095654
Total Gap Length 939
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APFS00000000.1