Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. EC-0012
NCBI Strain Identifiers EC-0012
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 117
N50 Contigs 152,247 bp
Longest Contig 355,601 bp
Scaffold Count 96
N50 Scaffolds 199,380 bp
Longest Scaffold 573,932 bp
Genome Size 4,031,923 bp
Protein Count 3,581
Coding Density 87.36%
GC Percentage 47.49%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34818v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00991870
Country Bangladesh
Date 2013-03-25
Genbank Assembly Accession GCA_000348185.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water sample
Latitude Longitude None
Molecule Count N/A
CDS Count 3,778
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 21
Species Taxid 666
SSU Count 5
Submitter Institute for Genome Sciences
Taxid 1095652
Total Gap Length 1540
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APFQ00000000.1