Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. AG-7404
NCBI Strain Identifiers AG-7404
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 98.1%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 1
tRNA Count 20
Contig Count 115
N50 Contigs 198,619 bp
Longest Contig 393,311 bp
Scaffold Count 95
N50 Scaffolds 246,318 bp
Longest Scaffold 610,898 bp
Genome Size 3,915,123 bp
Protein Count 3,490
Coding Density 87.29%
GC Percentage 47.47%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34812v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00989285
Country Bangladesh
Date 2013-3-25
Genbank Assembly Accession GCA_000348125.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,677
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 20
Species Taxid 666
SSU Count 5
Submitter Institute for Genome Sciences
Taxid 1095645
Total Gap Length 838
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APFN00000000.1